Cnmaestro overwrites profile_rule

Playing around with cnMaestro and cnPilot and have just discovered that when you set something in cnMaestro that it will overwrite whatever you have in the config file that is used in Provision -> Profile Rule field. An example, we have a provisioning server that generates the config files needed to get VoIP working with our system. The Profile Rule field is set to point to that server and all works well up until the point where you push a config change through cnMaestro using the “Default Home” AP group. My question is, what workarounds have been found to make the Profile Rule take precedence?